PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25875
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 280aa    MW: 29957.9 Da    PI: 10.401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25875genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.1e-26143201259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               dD ++WrKYGqK++k s+fpr+YY+C+s   C+++k v+rs   p+v+++tY ++H h 
  EMT25875 143 DDLWAWRKYGQKPIKASPFPRAYYKCSSLrACTARKLVDRSPAKPEVLIVTYIDDHCHA 201
               8**************************998**************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.177137203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-25138203IPR003657WRKY domain
SuperFamilySSF1182903.53E-22140203IPR003657WRKY domain
SMARTSM007741.5E-28142202IPR003657WRKY domain
PfamPF031062.4E-20143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSADWGLEA VVRSCGGSTV LPASEAEPEP TAARAGRGVV ARVASSGEFV GQRMKAASSS  60
SSSLYDVMER PRAPFSITPS STSRERNVPI SFSTSGQTLP GRKQTGRKPG VGTPTHRRRK  120
TSKKKVVRLV PVAHGGVANS TADDLWAWRK YGQKPIKASP FPRAYYKCSS LRACTARKLV  180
DRSPAKPEVL IVTYIDDHCH AVPVPITTLA HHPPKSPRGT TTAGEAVSVS SCIAAELADD  240
KSKLRAPVGL DDFFGSFDNT VFSRTWATTF VDDGFLPSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-141432031877Probable WRKY transcription factor 4
2lex_A8e-141432031877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565854.11e-71PREDICTED: WRKY transcription factor 22-like
TrEMBLM8BLM00.0M8BLM0_AEGTA; Uncharacterized protein
STRINGMLOC_56822.11e-110(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.17e-25WRKY family protein